ElShamah - Reason & Science: Defending ID and the Christian Worldview
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ElShamah - Reason & Science: Defending ID and the Christian Worldview

Otangelo Grasso: This is my library, where I collect information and present arguments developed by myself that lead, in my view, to the Christian faith, creationism, and Intelligent Design as the best explanation for the origin of the physical world.


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Neural plate folding and convergence

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1Neural plate folding and convergence Empty Neural plate folding and convergence Mon Sep 04, 2023 5:34 pm

Otangelo


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30. Neural plate folding and convergence

The development of the central nervous system (CNS) in vertebrates is a complex and meticulously orchestrated process. One of the initial and pivotal stages in the formation of the CNS is the emergence of the neural plate.

What is the Neural Plate?

The neural plate is a thickened layer of ectodermal tissue located in the dorsal region of the early embryo. It represents the primitive precursor to the entire central nervous system, which includes both the spinal cord and the brain.

Function and Development of the Neural Plate:

Induction: The formation of the neural plate, a process termed neural induction, is influenced by signals from the underlying mesoderm, particularly from an area called the notochord. This signaling suppresses the ectoderm's default pathway of becoming epidermis and instead induces it to form the neural plate.
Morphogenesis: Following its induction, the neural plate undergoes significant morphological changes. Its central region starts to elevate, forming the neural folds, while the middle part of the plate sinks, giving rise to the neural groove.
Neurulation: The neural plate's lateral edges (the neural folds) continue to elevate and eventually converge and fuse, transforming the plate into a tubular structure called the neural tube. This process is known as neurulation. The neural tube subsequently gives rise to the spinal cord and brain.

The neural plate's formation and subsequent folding into the neural tube are crucial for proper CNS development. Any perturbations during these processes can result in severe neural tube defects, such as spina bifida or anencephaly.


Neural plate folding and convergence

During early embryonic development, the nervous system begins its formation as a simple, flat structure called the neural plate. As development progresses, this plate undergoes a series of coordinated folding and convergent movements to form the neural tube, a precursor to the spinal cord and brain.

Induction of the Neural Plate: Early in development, signaling molecules induce a portion of the ectoderm (outermost germ layer) to differentiate into the neural plate. This region thickens and elongates.
Neural Fold Formation: As the neural plate continues to elongate, its lateral edges begin to elevate, forming the neural folds.
Convergence and Fusion: The neural folds approach each other at the midline and eventually fuse, transforming the once flat neural plate into a cylindrical neural tube. This tube will eventually give rise to the central nervous system: the spinal cord and brain.
Closure of the Neural Tube: The tube typically closes in multiple regions simultaneously. Any failure in this closure process can lead to neural tube defects, such as spina bifida or anencephaly, depending on where the closure fails.

Importance in Biological Systems

The neural plate folding and convergence process is pivotal for proper nervous system development. The formation of the neural tube is the embryonic foundation for the entire central nervous system. Mistakes or disruptions during this process can lead to severe congenital conditions that can affect an individual's quality of life or even be life-threatening. This complex morphogenetic event showcases the precision required in developmental processes and how tightly regulated and choreographed cellular behaviors are essential for forming complex structures in higher organisms.

How does the neural plate accurately fold and converge to form the neural tube?

The formation of the neural tube from the neural plate is a fundamental process during the embryonic development of many animals, including humans. This process is termed "neurulation." Here is a simplified overview of how the neural plate folds to form the neural tube:

Establishment of the Neural Plate: Early in embryonic development, specific signaling molecules, like bone morphogenetic proteins (BMPs) and their antagonists, help establish the neural plate, a thickened area of the ectoderm (the outermost germ layer).
Neural Plate Border Formation: The edges of the neural plate, known as the neural plate border, become identifiable. The cells here will give rise to the neural crest cells.
Elevation of the Neural Folds: As development progresses, the lateral edges of the neural plate start to elevate and form the "neural folds."
Convergent Extension: Cells in the neural plate undergo changes in their shape and arrangement, a process known as convergent extension. This causes the neural plate to narrow and elongate, pushing the neural folds upwards and towards the midline.
Medial Hinge Point (MHP) Formation: Cells in the center of the neural plate, particularly at the future site of the dorsal midline, become anchored and form a hinge known as the medial hinge point (MHP). This hinge is critical for the bending of the neural plate.
Bending of the Neural Plate: Cells at the MHP change shape, becoming wedge-shaped. This shape change, along with convergent extension, allows the neural folds to move toward each other.
Closure of the Neural Tube: Eventually, the elevated neural folds meet and fuse at the midline, transforming the neural plate into a closed neural tube. The neural tube will give rise to the central nervous system (brain and spinal cord).
Neural Crest Cell Migration: After the neural tube closes, neural crest cells, which are located at the junction between the neural tube and the non-neural ectoderm, begin to migrate and differentiate into various cell types, such as peripheral neurons, glial cells, and melanocytes.
Closure Completion: The process of neural tube closure starts at multiple points along the anterior-posterior axis and proceeds bidirectionally. For instance, in humans, the neural tube closure starts in the region of the future neck and proceeds both cranially (toward the head) and caudally (toward the tail).

How does this convergence contribute to the formation of the CNS?

The convergence and folding of the neural plate to form the neural tube is the foundational process in the formation of the central nervous system (CNS), which consists of the brain and the spinal cord. Here's how this convergence contributes to the formation of the CNS:

Specification of CNS Regions: As the neural plate folds and converges to form the neural tube, various regions of the tube become specified to give rise to different parts of the CNS. The anterior (front) part of the neural tube will develop into the brain, while the posterior (back) part will become the spinal cord.
Neural Tube as the Precursor: The neural tube itself serves as the precursor to the CNS. Once it has formed, its internal cavity will become the ventricular system of the brain and the central canal of the spinal cord.
Patterning and Differentiation: Within the neural tube, a variety of molecular gradients and signaling pathways define specific regions along both the anterior-posterior axis (from head to tail) and the dorsal-ventral axis (from back to belly). These signaling pathways allow for the differentiation of specific types of neurons and glial cells in precise locations. For instance, motor neurons develop in the ventral part of the neural tube, while sensory neurons develop from the neural crest cells that originate from the dorsal part of the tube.
Brain Vesicle Formation: In the anterior part of the neural tube, it will start to expand and differentiate further, giving rise to three primary vesicles: the forebrain (prosencephalon), midbrain (mesencephalon), and hindbrain (rhombencephalon). As development continues, these vesicles will undergo further specialization to form the different regions of the brain.
Growth and Elaboration: As the neural tube matures, there's a rapid proliferation of neurons. Neurons then extend axons and dendrites, forming intricate networks of connections. Glial cells also proliferate and play roles in supporting neurons, insulating axons, and maintaining homeostasis.
Central Canal Formation: The lumen (internal cavity) of the neural tube persists as the central canal in the spinal cord and as the ventricular system in the brain. These cavities will be filled with cerebrospinal fluid, which plays a crucial role in cushioning the CNS, providing nutrients, and removing waste.

Neural plate folding and convergence Sem_t109
Neural crest formation during neurulation. 1

At what point in the evolutionary timeline did neural plate folding and convergence appear?

The process of neurulation, which involves the folding and convergence of the neural plate to form a neural tube, is observed in chordates, a large and diverse group of animals that includes vertebrates (animals with backbones, like fish, birds, mammals, etc.) as well as some invertebrates, such as tunicates and cephalochordates (e.g., amphioxus or lancelets). Given this distribution, the appearance of neurulation is claimed to be traced back to the common ancestor of chordates. This would suggest that the process is quite ancient, originating more than 500 million years ago during the Cambrian period or even earlier. The Cambrian period, in particular, is notable for the "Cambrian explosion," a relatively short evolutionary interval during which many major animal phyla (including chordates) appeared in the fossil record.

Simpler Nervous Systems Before Neurulation: Before the evolution of chordates, simpler nervous systems would have existed in other animal groups. For instance, cnidarians (like jellyfish) and flatworms have nerve nets or simple nerve cords, but they do not form via neurulation.
Diversification of Neural Structures: Within chordates, the specific structure and complexity of the central nervous system (CNS) would have diversified. While all chordates form a neural tube, the subsequent development of this tube can vary widely. For example, vertebrates possess a much more complex CNS compared to tunicates or lancelets.
Vertebrate Advancements: Among the chordates, vertebrates represent a further elaboration on the neural tube theme. The vertebrate CNS (brain and spinal cord) is considerably diversified and specialized, leading to the advanced brains observed in mammals, birds, reptiles, and other groups.

What genetic information was necessary to be created de novo, to instantiate neural plate folding and convergence?

Neural plate folding and its subsequent convergence to form the neural tube are fundamental processes during vertebrate embryogenesis. This process leads to the formation of the central nervous system, including the brain and the spinal cord. The precise molecular and genetic pathways that guide this process have been an area of intense research, with many genes and signaling pathways implicated.
It is essential to differentiate between genes that were already present in an ancestor and used in a new context versus those that might have arisen de novo (from scratch).  Here's a basic outline of some of the main genetic players involved in neural plate folding and convergence, although it's worth noting that this is an extensive topic and the list isn't exhaustive:

Induction of the Neural Plate: Before folding, there's neural induction, which delineates the neural plate from the surrounding ectoderm. The process is thought to be driven by the suppression of BMP signaling by factors like Noggin, Chordin, and Follistatin that are secreted from the underlying organizer tissue.
Boundary Formation: The edges of the neural plate, called the neural plate border, become defined. PAX3, PAX7, MSX1/2, and ZIC1 are some of the genes that define this region and subsequently give rise to neural crest cells.
Convergence and Extension Movements: Cellular movements cause the neural plate to narrow (convergence) and lengthen (extension). This involves non-canonical Wnt signaling with players like Wnt11 and the PCP (planar cell polarity) pathway. Key components include Vangl2, Prickle, and Celsr1.
Neural Plate Folding: Cells in the medial hinge point (MHP) undergo apical constriction driven by actin-myosin contractility, causing the neural plate to fold. Shh (Sonic Hedgehog) signaling is essential for MHP specification.
Closure of the Neural Tube: The elevated edges of the neural plate, called the neural folds, converge and fuse at the dorsal midline. E-cadherin, a cell-cell adhesion molecule, is crucial for this fusion.
Other Signaling Pathways: A multitude of other signaling pathways, including retinoic acid, FGF, and Notch, have roles in various aspects of neural plate development and neural tube closure.

The genes and pathways mentioned above did not all arise de novo for the purpose of neural tube formation. Many are claimed to have been co-opted from other processes and have roles in other parts of embryonic development.  The genetics of neural tube development is complex, and much has been learned from model organisms such as the frog, zebrafish, chickens, and mouse. However, many details, especially at the molecular and cellular level, are still the subject of active research.

Which manufacturing codes and languages had to emerge and be employed for neural plate folding and convergence?

When we talk about "manufacturing codes" and "languages" in the context of biology and embryogenesis, we're using metaphorical language to describe the complex interplay of genetic, molecular, and cellular processes that drive development. There are specific sequences, signals, and regulatory mechanisms that guide development. These biological "codes" are carried out through gene expression, protein-protein interactions, and cell-cell communication.

Genetic Code: This is the actual sequence of DNA that encodes genes. Every cell in an organism (with some exceptions like mature red blood cells) contains the entire genetic code of that organism. Genes get transcribed into RNA and then many of them get translated into proteins, which carry out most of the functions in cells.
Regulatory Elements: Beyond the genes themselves, the DNA contains regulatory sequences that determine when, where, and how strongly a gene gets expressed. These include promoters, enhancers, silencers, and insulators. Transcription factors bind to these regions to activate or repress gene expression. This can be thought of as the "programming logic" of development.
Signaling Pathways: Cells communicate with each other using signaling molecules. A cell will produce and release a signaling molecule (e.g., a growth factor) which will bind to a receptor on another cell, initiating a cascade of events inside that cell that can change its behavior. This is akin to a "communication protocol" between cells.
Feedback Loops: Many biological processes involve feedback mechanisms where the product of a process affects the rate of that process. This can result in systems that are self-regulating, oscillating, or that have multiple stable states. This is a kind of "dynamic programming."
Cell Behaviors: Cells can move, change shape, divide, differentiate, or die. These behaviors are the result of interpreting the genetic "code" in a specific context. For example, neural plate cells undergo specific movements and changes in shape that lead to folding and convergence.

In the specific context of neural plate folding and convergence, all of these "codes" and "languages" come into play. The genetic code provides the raw information, regulatory elements determine the timing and location of gene expression, signaling pathways allow cells to coordinate their behavior, molecular machines carry out the functions, feedback loops ensure robustness and precision, and the end result is a set of coordinated cell behaviors that form the neural tube.

What epigenetic regulatory mechanisms are necessary for proper neural plate folding and convergence?

DNA Methylation: This is the addition of a methyl group to the cytosine base in DNA. In general, methylation of gene promoter regions is associated with repression of gene expression. DNA methylation patterns change dynamically during neural development and play a role in cellular differentiation and maintaining the identity of neural cells.
Histone Modifications: Histones are proteins around which DNA is wrapped, forming a structure called nucleosome. The tails of histones can be chemically modified in various ways, such as methylation, acetylation, phosphorylation, and ubiquitination. Each modification can have different effects on gene expression, depending on the specific histone, the amino acid modified, and the type of modification. For example, histone H3 lysine 27 trimethylation (H3K27me3) is associated with gene repression, while histone H3 lysine 4 trimethylation (H3K4me3) is linked with gene activation. These modifications play a role in defining and maintaining cellular identities during neural development.
Chromatin Remodeling: Chromatin is the complex of DNA and histones. Chromatin remodeling complexes can change the positioning or composition of nucleosomes, affecting the accessibility of DNA to transcriptional machinery. This can either activate or repress gene expression, depending on the context. For instance, the SWI/SNF (or BAF) complex has been implicated in neural development and differentiation.
Non-coding RNAs: These are RNA molecules that don't code for proteins but play roles in regulating gene expression. Two significant classes are microRNAs (miRNAs) and long non-coding RNAs (lncRNAs). miRNAs can bind to messenger RNAs (mRNAs) and prevent their translation or lead to their degradation. lncRNAs have diverse functions, including serving as scaffolds for protein complexes, sequestering miRNAs, and directly interacting with DNA to affect its structure and accessibility. Several non-coding RNAs are crucial for various aspects of neural development.
RNA Methylation: Just as DNA can be methylated, modifications to RNA, such as N6-methyladenosine (m6A), have been discovered and play roles in RNA stability, splicing, and translation. These modifications can impact neural development, although the full scope of their functions is still being explored.
Three-dimensional Chromatin Organization: The spatial arrangement of chromatin in the nucleus, forming loops and domains, plays a role in gene regulation by bringing distant regulatory elements into proximity with genes. Structures like topologically associating domains (TADs) and the associated proteins (like CTCF) that help shape the 3D genome can influence neural gene expression patterns.

These epigenetic mechanisms interact and often converge at particular genes to ensure precise spatial and temporal gene expression patterns necessary for neural plate folding, convergence, and other aspects of neural development. Dysregulation of these mechanisms can lead to developmental disorders or diseases later in life.

Which signaling pathways support neural plate folding and convergence?

The formation of the neural tube from the neural plate involves intricate cellular processes that are tightly regulated by various signaling pathways. These pathways guide the neural plate cells in their migration, proliferation, differentiation, and morphological changes. Here are the major signaling pathways implicated in neural plate folding and convergence:

Bone Morphogenetic Protein (BMP) Pathway: During neural induction, the inhibition of BMP signaling is critical for neural plate formation. Molecules like Noggin, Chordin, and Follistatin, which are secreted from the underlying organizer tissue (such as the notochord), act as BMP antagonists. In the absence of BMP signaling, ectodermal cells are more inclined to adopt a neural fate.
Sonic Hedgehog (Shh) Pathway: Shh is secreted primarily from the notochord and later from the floor plate of the developing neural tube. It plays a role in specifying ventral cell fates within the neural tube and is essential for the formation and function of the medial hinge point during neural plate folding.
Wnt Pathway: The Wnt signaling pathway is implicated in various aspects of neural development. Canonical Wnt/β-catenin signaling plays a role in dorsal neural tube cell fates, whereas non-canonical Wnt signaling (often referred to as the Planar Cell Polarity or PCP pathway) is involved in the convergence and extension movements that narrow and elongate the neural plate.
Notch Pathway: Notch signaling is pivotal for cell-cell communication and plays roles in regulating neural progenitor differentiation and maintaining the balance between neural progenitors and differentiated neurons.
Fibroblast Growth Factor (FGF) Pathway: FGF signaling is involved in neural induction and the subsequent patterning of the neural plate. It also plays roles in neural progenitor proliferation and differentiation.
Retinoic Acid (RA) Pathway: RA, a derivative of vitamin A, plays roles in the anteroposterior patterning of the neural tube, especially in the hindbrain region. It also affects the timing of neurogenesis.
TGF-β/Activin/Nodal Pathway: Members of the TGF-β superfamily, like Activin and Nodal, are involved in mesendoderm formation and can influence neural induction and patterning indirectly through their effects on organizer tissue formation.
Cilia-Associated Signaling: Primary cilia, which are small microtubule-based protrusions from the cell surface, play roles in sensing and transducing signals from various pathways, including Shh and Wnt. Proper ciliary function is required for correct Shh signal transduction during neural development.

Many of these pathways interact, and cells often integrate signals from multiple pathways to make decisions about fate and behavior. Proper coordination and regulation of these pathways are essential for the correct morphogenesis of the neural tube, and disruptions can lead to neural tube defects, a common class of congenital malformations.

What regulatory codes are essential for the maintenance and operation of neural plate folding and convergence?

The process of neural plate folding and convergence is a complex orchestration of cellular behaviors governed by intricate regulatory networks. These networks can be thought of as "regulatory codes" that ensure cells exhibit the right behavior at the right time and place. Here are the primary regulatory codes essential for neural plate folding and convergence:

Transcriptional Regulation: This refers to the control of gene expression at the level of transcription. Specific sets of transcription factors are expressed in the neural plate and its border, and they regulate the genes responsible for neural identity, morphogenesis, and other processes associated with neural plate development.
Key factors: Sox2, Sox3, Zic1/2/3, Pax3/4/6, and Msx1/2 are some of the transcription factors crucial for neural plate and neural crest specification, respectively.
Post-Transcriptional Regulation: After genes are transcribed, their RNA products can still be regulated, affecting their stability, splicing, or translation.
Role of microRNAs (miRNAs): These are small non-coding RNAs that can bind to messenger RNAs (mRNAs) and inhibit their translation or induce their degradation. Specific miRNAs have roles in various aspects of neural development.
Epigenetic Regulation: As discussed previously, modifications like DNA methylation, histone modifications, and chromatin remodeling play a role in determining which genes are accessible and can be transcribed. For example, the repressive H3K27me3 mark may be placed on non-neural genes in the neural plate to ensure they remain off.
Cell-Cell Signaling Pathways: Cells in the developing embryo communicate with each other, sending and receiving signals that dictate cell behaviors. As mentioned before, BMP, Shh, Wnt, FGF, Notch, and other pathways are all active during neural plate development, providing necessary regulatory inputs.
Mechanical Forces and Feedback: The physical properties of cells and their environment can influence and be influenced by the genetic and signaling codes. For instance, the apical constriction of cells in the neural plate, driven by actin-myosin contractility, is essential for neural tube folding. Feedback from these mechanical processes can further influence gene expression and cellular behaviors.
Cell Adhesion and Polarization: The proper adhesion between cells and the polarization of cells (distinguishing an apical from a basal side) are crucial for the coordinated movements during neural plate folding. Molecules like cadherins and integrins play a role in ensuring cells stick together appropriately, and proteins like Par3, Par6, and aPKC help establish and maintain cell polarity.
Feedback Loops: Several signaling pathways have built-in feedback mechanisms, both positive and negative. For example, a signaling molecule might activate the transcription of its inhibitor, creating a negative feedback loop. These loops ensure robustness, fine-tuning, and can create dynamic behaviors like oscillations.
Gradient and Threshold Interpretation: Many signaling pathways operate as gradients across tissues. Cells can interpret the level (or concentration) of a signal and respond accordingly, often by expressing different genes above specific thresholds. This mechanism helps establish different cell fates across a tissue.

The integration of these various codes, from the genetic level to the physical interactions between cells, ensures the accurate morphogenesis of the neural tube. Dysregulation of any part of this regulatory network can lead to neural tube defects and other developmental anomalies.

Is there scientific evidence supporting the idea that neural plate folding and convergence were brought about by evolution?

Neural plate folding and convergence is a marvel of biological engineering, showcasing an intricate and interwoven dance of cellular behaviors, signaling cascades, genetic codes, and molecular mechanisms. When delving into the specifics of this process, one might argue that the complex series of events leading to the formation of the neural tube appears orchestrated in such a way that partial or intermediate systems  seem non-functional or even detrimental. 

Complex Interdependence: The process of neural plate folding and convergence isn't a simple one-step mechanism. It requires the intricate coordination of multiple systems, each consisting of numerous components. For instance, signaling pathways like BMP, Shh, and Wnt must work in tandem, where the absence or malfunction of one pathway could disrupt the entire developmental process. This raises the question: how could such a multifaceted system have evolved piece by piece if each component is reliant on the others for function?
Requirement of Precise Timing: The sequence and timing of events during neural plate development are crucial. A delay in one process or an early initiation of another could lead to catastrophic consequences, such as neural tube defects. For evolution to guide such a finely-tuned process step by step seems a challenging proposition given the precision required.
No Advantage in Partial Systems: For evolution to favor a trait, that trait usually needs to confer some advantage. However, with neural plate folding, partial or intermediate stages might not provide any functional benefit. For instance, a partially folded neural plate that doesn't close might not be beneficial and could instead be harmful.
Instantiation of Genetic and Epigenetic Codes: The genetic code guiding neural plate development is intricate, encompassing not just genes but also regulatory elements, enhancers, silencers, and more. Beyond genetics, there's also the layer of epigenetics, which determines which genes are accessible and when. Such multilayered regulation seems too complex to have arisen step by step without a guiding force, as missing a single component could render the entire system non-functional.
Proteins and Their Specificity: Many proteins involved in neural plate folding are multifunctional, playing roles in various cellular processes. Their precise interactions, binding sites, and functions in the context of neural plate development are specific and intricate. The chance of emergence of such multifunctional proteins seems unlikely, especially since a minor alteration in their structure could render them non-functional or even harmful.
Cellular Behaviors and Coordination: Beyond molecular and genetic intricacies, there's the added complexity of cellular behaviors like migration, proliferation, and differentiation. Each cell in the developing neural plate seems to know its role, suggesting a pre-defined plan rather than a series of evolutionary accidents.

Potential for Detriment in Errors: In many biological systems, small errors can be tolerated. However, in processes as complex and vital as neural tube formation, mistakes can lead to severe consequences, like spina bifida or anencephaly. Given the high stakes, the evolution of such a system in a piecemeal manner seems improbable, as errors would be catastrophic.

In light of the above points, one might argue that the complexity and precision required for neural plate folding and convergence make a step-by-step evolutionary process implausible. Instead, it might be posited that the entire system, in all its intricacy, had to emerge fully formed and functional, suggesting a design by an intelligent entity.

What components of neural plate folding and convergence are irreducible and interdependent for its proper function?

For neural plate folding and convergence, several components and processes are critical, and they function in an interdependent manner. 

Signaling Pathways: A variety of signaling pathways, including BMP, Shh, Wnt, and FGF, must be tightly coordinated for neural plate folding. The absence or malfunction of one pathway can disrupt the balance of signals required for proper neural plate development.
Transcription Factors: These are proteins that help turn specific genes on or off. Many transcription factors are crucial for neural plate development, including Sox2, Sox3, Pax3, and Zic genes. Their absence or malfunction can impede proper neural differentiation and folding.
Mechanical Forces: Cellular behaviors, such as apical constriction, are driven by actin-myosin contractility. This mechanical force is critical for the bending of the neural plate. Without it, neural plate folding would not occur.
Cell-Cell Adhesion Molecules: Molecules like cadherins are crucial for cells to adhere to each other during the folding process. Disruption of these adhesion molecules can prevent the neural plate from folding properly.
Cell Polarity Proteins: These ensure that cells have a distinct "top" (apical) and "bottom" (basal) side. Proteins like Par3, Par6, and aPKC are crucial for establishing this polarity. Without proper cell polarity, the coordinated behaviors required for neural plate folding would be disrupted.
Extracellular Matrix (ECM): The ECM provides structural support to tissues. Changes in ECM composition or the interaction of cells with the ECM can influence neural plate folding. Molecules like fibronectin play a role in guiding cell movements during this process.
Apoptosis Mechanisms: Programmed cell death, or apoptosis, can shape the neural plate and tube. Properly timed apoptosis is essential for neural tube closure in some regions.
Feedback Loops: Signaling pathways often have feedback mechanisms to ensure they aren't perpetually on or off. These feedback loops, both positive and negative, are crucial for the dynamic behaviors observed during neural plate folding.

In a system as intricate as neural plate folding and convergence, each component and process has a role to play, and they all work in concert. From an "irreducible complexity" perspective, one could argue that removing any of these components would hinder or halt the process altogether. However, it's worth noting that the concept of irreducible complexity is controversial in the broader scientific community, as many believe that evolutionary processes can, and often do, build complex systems incrementally over time.

Once neural plate folding and convergence is operational, with what intra and extracellular systems does it interact?

The process of neural plate folding and convergence does not occur in isolation. Instead, it interacts with various intracellular and extracellular systems that coordinate to ensure the proper formation of the neural tube. Here's a breakdown of these interactions:

Intracellular Systems: Cytoskeletal Dynamics: The cytoskeleton, composed primarily of actin filaments, microtubules, and intermediate filaments, undergoes dynamic rearrangements during neural plate folding. Particularly, actin-myosin contractility at the apical side of the neural plate cells drives their shape changes, which are critical for the folding process.
Cell Polarity Machinery: Intracellular polarity complexes, such as the Par complex (including Par3, Par6, and aPKC), help establish and maintain the apical-basal polarity of the neural plate cells. Proper cell polarity is essential for the coordinated cell behaviors during neural plate folding.
Transcriptional and Translational Machinery: The cellular machinery responsible for gene expression is continuously active, ensuring that the right proteins are synthesized at the right time. Transcription factors, ribosomes, and various associated molecules play pivotal roles.
Intracellular Signaling Pathways: These pathways interpret extracellular signals and ensure appropriate cellular responses. Examples include the cascades triggered by BMP, Shh, and Wnt signals, which influence gene expression and cell behavior.

Extracellular Systems

Extracellular Matrix (ECM): The ECM provides structural support and guidance cues for migrating cells during neural tube closure. It contains molecules like fibronectin, laminin, and collagen. Neural plate cells interact with the ECM via cell surface receptors, such as integrins.
Cell-Cell Communication: Neighboring cells communicate via various methods:
Gap Junctions: Allow for direct cytoplasmic communication between cells.
Adherens Junctions and Tight Junctions: Provide mechanical attachment between cells and help maintain tissue integrity.
Morphogens and Growth Factors: These are signaling molecules that can influence cell fate and behavior. They often form gradients in the developing embryo, with cells responding differently based on their position within the gradient. Examples affecting neural development include BMPs, Shh, Wnts, and FGFs.
Surrounding Tissues: The behavior of the neural plate is influenced by neighboring tissues. For example:
Surface Ectoderm: Lies adjacent to the neural plate and influences its behavior through secreted signals and physical interactions.
Mesoderm: Especially the notochord, which lies beneath the neural plate, secretes signals like Shh that influence neural plate development.
Endoderm: The most ventral germ layer can also exert influences on neural plate and tube dynamics.
Mechanical Forces: Forces from neighboring tissues can influence neural plate behavior. For instance, the expansion of the adjacent surface ectoderm can exert forces on the neural plate.

In essence, neural plate folding and convergence are processes deeply integrated with a host of intracellular and extracellular systems, showcasing the remarkable coordination and complexity of embryonic development.

1. Wikipedia: Neural plate

https://reasonandscience.catsboard.com

2Neural plate folding and convergence Empty Re: Neural plate folding and convergence Mon Sep 04, 2023 6:04 pm

Otangelo


Admin

References

Neural plate folding and convergence , overview, same as above

The process of neural plate folding and convergence is an essential step during the formation of the neural tube in embryonic development. Here are some key references that provide insights into these processes:

Schoenwolf, G. C., & Smith, J. L. (1990). Mechanisms of neurulation: traditional viewpoint and recent advances. Development, 109(2), 243-270. Link. (This comprehensive review discusses the mechanisms underlying neurulation, including neural plate folding and convergence.)
Colas, J. F., & Schoenwolf, G. C. (2001). Towards a cellular and molecular understanding of neurulation. Developmental Dynamics, 221(2), 117-145. Link. (This paper offers insights into the cellular and molecular basis of neurulation, providing a detailed understanding of the topic.)
Smith, J. L., & Schoenwolf, G. C. (1987). Notochordal induction of cell wedging in the chick neural plate and its role in neural tube formation. Journal of Experimental Zoology, 244(1), 49-60. Link. (This article focuses on the role of the notochord in inducing cell wedging in the neural plate, which plays a role in neural tube formation.)
Copp, A. J., Greene, N. D. E., & Murdoch, J. N. (2003). The genetic basis of mammalian neurulation. Nature Reviews Genetics, 4(10), 784-793. Link. (A significant review detailing the genetic factors that play a role in neurulation, including the processes of neural plate folding and convergence.)
Ybot-Gonzalez, P., Gaston-Massuet, C., Girdler, G., Klingensmith, J., Arkell, R., Greene, N. D., & Copp, A. J. (2007). Neural plate morphogenesis during mouse neurulation is regulated by antagonism of Bmp signalling. Development, 134(17), 3203-3211. Link. (This paper discusses the role of Bmp signaling in regulating neural plate morphogenesis, emphasizing its critical function in neural tube formation.)

What genetic information was necessary to be created de novo, to instantiate neural plate folding and convergence?

The process of neural plate folding and convergence to form the neural tube is complex and involves an intricate interplay of genetic, cellular, and mechanical forces. Understanding the specific de novo genetic information required for this process is an ongoing area of research.

Copp, A. J., Greene, N. D., & Murdoch, J. N. (2003). The genetic basis of mammalian neurulation. Nature Reviews Genetics, 4(10), 784-793. Link. (A review discussing the genetic aspects of neurulation.)
Nikolopoulou, E., Galea, G. L., Rolo, A., Greene, N. D., & Copp, A. J. (2017). Neural tube closure: cellular, molecular and biomechanical mechanisms. Development, 144(4), 552-566. Link. (This paper delves deeper into the cellular and molecular mechanisms of neurulation.)

Which manufacturing codes and languages had to emerge and be employed for neural plate folding and convergence?

Neural plate folding and convergence are intricate processes controlled by a myriad of signaling pathways, molecular interactions, and mechanical forces. Here are some pivotal references on the manufacturing codes and languages (signaling pathways and molecular mechanisms) governing this phenomenon:

Galea, G. L., Nychyk, O., Mole, M. A., Moulding, D., & Savery, D. (2018). Biomechanics of neurulation. Seminars in cell & developmental biology, 81, 80-89. Link. (This paper provides a comprehensive review of the mechanical forces and molecular interactions that guide neural plate folding.)
Nikolopoulou, E., Galea, G. L., Rolo, A., Greene, N. D., & Copp, A. J. (2017). Neural tube closure: cellular, molecular and biomechanical mechanisms. Development, 144(4), 552-566. Link. (This seminal article discusses the complex cellular, molecular, and biomechanical mechanisms that contribute to neural tube closure.)
Ybot-Gonzalez, P., Gaston-Massuet, C., & Copp, A. J. (2007). Neural plate morphogenesis during mouse neurulation is regulated by antagonism of Bmp signalling. Development, 134(17), 3203-3211. Link. (This study highlights the role of BMP signaling in neural plate morphogenesis.)
Steventon, B., Mayor, R., & Streit, A. (2014). Neural crest and placode interaction during the development of the cranial sensory system. Developmental biology, 389(1), 28-38. Link. (This paper emphasizes the role of cell-cell interactions, particularly between the neural crest and placodes, during cranial sensory system development, which follows neural plate folding.)
Sai, X., & Ladher, R. K. (2008). FGF signaling regulates cytoskeletal remodeling during epithelial morphogenesis. Current Biology, 18(14), 976-981. Link. (This research article offers insights into how FGF signaling modulates the cytoskeleton during epithelial tissue morphogenesis, which is pivotal for neural plate folding.)

Which signaling pathways support neural plate folding and convergence?

Neural plate folding and convergence during neurulation involve a series of intricate cellular and molecular events. These processes are guided by multiple signaling pathways. Here's a list of references discussing the signaling pathways that support these critical events:

Schoenwolf, G. C., & Smith, J. L. (1990). Mechanisms of neurulation: traditional viewpoint and recent advances. Development, 109(2), 243-270. Link. (This is a foundational paper that provides a general overview of the mechanisms of neurulation, including signaling pathways.)
Ybot-Gonzalez, P., Savery, D., Gerrelli, D., Signore, M., Mitchell, C. E., Faux, C. H., ... & Copp, A. J. (2007). Convergent extension, planar-cell-polarity signaling, and initiation of mouse neural tube closure. Development, 134(4), 789-799. Link. (This paper discusses the role of planar cell polarity (PCP) signaling in the context of neural tube closure.)
Elul, T., & Keller, R. (2000). Monopolar protrusive activity: a new morphogenic cell behavior in the neural plate dependent on vertical interactions with the mesoderm in Xenopus. Developmental Biology, 224(1), 3-19. Link. (The paper investigates the interplay between the neural plate and mesoderm, highlighting the importance of cell interactions in the folding and convergence of the neural plate.)
Ossipova, O., Tabler, J., Green, J. B., & Sokol, S. Y. (2015). PAR1 specifies ciliated cells in vertebrate ectoderm downstream of aPKC. Development, 142(24), 4412-4422. Link. (Focuses on the role of the PAR-aPKC pathway in the formation and function of ciliated cells, which are implicated in convergent extension during neurulation.)
Kibar, Z., Vogan, K. J., Groulx, N., Justice, M. J., Underhill, D. A., & Gros, P. (2001). Ltap, a mammalian homolog of Drosophila Strabismus/Van Gogh, is altered in the mouse neural tube mutant Loop-tail. Nature Genetics, 28(3), 251-255. Link. (This study elaborates on the role of the Vangl2 protein in PCP signaling and its implications for neural tube morphogenesis.)
Ciruna, B., & Rossant, J. (2001). FGF signaling regulates mesoderm cell fate specification and morphogenetic movement at the primitive streak. Developmental Cell, 1(1), 37-49. Link. (Highlights the role of FGF signaling in determining cell fate and its influence on the behaviors that lead to neural plate convergence and folding.)

What regulatory codes are essential for the maintenance and operation of neural plate folding and convergence?

The intricate processes of neural plate folding and convergence during neurulation are regulated by various transcriptional, translational, and post-translational codes. These codes essentially determine the timing, positioning, and coordination of cells and tissues involved in neurulation. Let's explore some of the seminal papers addressing the regulatory codes vital for these processes:

Brugmann, S. A., Pandur, P. D., Kenyon, K. L., Pignoni, F., & Moody, S. A. (2004). Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and repressor. Development, 131(23), 5871-5881. Link. (This paper discusses the transcriptional roles of the Six1 homeobox gene in regulating early neural plate development.)
Wilson, V., & Beddington, R. (1996). Cell fate and morphogenetic movement in the late mouse primitive streak. Mechanisms of Development, 55(1), 79-89. Link. (Addresses the importance of regulatory codes in primitive streak development, which is closely related to neural plate morphogenesis.)
Niehrs, C. (2010). On growth and form: a Cartesian coordinate system of Wnt and BMP signaling specifies bilaterian body axes. Development, 137(6), 845-857. Link. (A comprehensive review on Wnt and BMP signaling pathways' regulation and their pivotal roles in specifying body axes, including neural plate folding and convergence.)
De Robertis, E. M., & Kuroda, H. (2004). Dorsal-ventral patterning and neural induction in Xenopus embryos. Annual Review of Cell and Developmental Biology, 20, 285-308. Link. (Provides insights into the mechanisms of dorsal-ventral patterning and neural induction, elaborating on the roles of signaling gradients and transcriptional networks.)
Steventon, B., Carmona-Fontaine, C., & Mayor, R. (2005). Genetic network during neural crest induction: from cell specification to cell survival. Seminars in Cell & Developmental Biology, 16(6), 647-654. Link. (Details the genetic networks involved in neural crest induction, emphasizing the importance of interlinked regulatory mechanisms.)
Munoz-Sanjuan, I., & Brivanlou, A. H. (2002). Neural induction, the default model and embryonic stem cells. Nature Reviews Neuroscience, 3(4), 271-280. Link. (This review explains the concept of neural induction as a default mechanism and its implications for regulatory networks in neurulation.)

Evolution of neural plate folding

The evolution of neural plate folding and neurulation is a captivating area of developmental biology. It pertains to how the mechanisms responsible for the formation of the neural tube, a precursor to the central nervous system, evolved in different organisms. The process is vital for the development of the brain and spinal cord in vertebrates.

Holland, L. Z., & Holland, N. D. (1999). Chordate origins of the vertebrate central nervous system. Current Opinion in Neurobiology, 9(5), 596-602. Link. (This paper provides insights into the origins of the chordate central nervous system, establishing the evolutionary context for neural tube formation.)
Lowe, C. J., Wu, M., Salic, A., Evans, L., Lander, E., Stange-Thomann, N., ... & Kirschner, M. W. (2003). Anteroposterior patterning in hemichordates and the origins of the chordate nervous system. Cell, 113(7), 853-865. Link. (Discusses the evolution of the nervous system by studying hemichordates, which are closely related to chordates.)
Arendt, D., Denes, A. S., Jékely, G., & Tessmar-Raible, K. (2008). The evolution of nervous system centralization. Philosophical Transactions of the Royal Society B: Biological Sciences, 363(1496), 1523-1528. Link. (This review focuses on how centralization in the nervous system evolved, offering a broader view on the evolution of neurulation.)
Hejnol, A., & Lowe, C. J. (2015). Embracing the comparative approach: how robust phylogenies and broader developmental sampling impacts the understanding of nervous system evolution. Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1684), 20150045. Link. (Highlights the importance of comparative developmental biology in understanding the evolution of the nervous system, including neural plate folding.)
Steventon, B., Mayor, R., & Streit, A. (2014). Neural crest and placode interaction during the development and evolution of the head. Developmental Biology, 389(1), 28-38. Link. (Addresses the co-evolution of neural crest cells and placodes, two major vertebrate innovations, with implications for neural plate folding.)

Once neural plate folding and convergence is operational, with what intra and extracellular systems does it interact? 

Ybot-Gonzalez, P., Gaston-Massuet, C., & Copp, A. J. (2007). Neural plate morphogenesis during mouse neurulation is regulated by antagonism of Bmp signalling. Development, 134(17), 3203-3211. Link. (Describes the role of the ECM and Bmp signaling in neural plate morphogenesis.)
Duband, J. L., Monier, F., Delannet, M., & Newgreen, D. (1995). Epithelium-mesenchyme transition during neural crest development. Acta Anatomica, 154(1), 63-78. Link. (Explores the significance of CAMs in neural crest cell migration, which is concurrent with neurulation.)
Wallingford, J. B., & Harland, R. M. (2002). Neural tube closure requires Dishevelled-dependent convergent extension of the midline. Development, 129(24), 5815-5825. Link. (Highlights the role of the PCP pathway in neural tube closure.)
Jessell, T. M. (2000). Neuronal specification in the spinal cord: inductive signals and transcriptional codes. Nature Reviews Genetics, 1(1), 20-29. Link. (Delves into the role of Shh in dorsal-ventral patterning.)
Wilson, L., & Maden, M. (2005). The mechanisms of dorsoventral patterning in the vertebrate neural tube. Developmental Biology, 282(1), 1-13. Link. (Outlines the function of BMPs and Wnts in dorsal-ventral patterning.)
Maden, M. (2007). Retinoic acid in the development, regeneration and maintenance of the nervous system. Nature Reviews Neuroscience, 8(10), 755-765. Link. (Describes the significance of retinoic acid in neural tube patterning.)
Copp, A. J., Greene, N. D., & Murdoch, J. N. (2003). The genetic basis of mammalian neurulation. Nature Reviews Genetics, 4(10), 784-793. Link. (Highlights the significance of tissue interactions during neurulation.)
Escuin, S., Vernay, B., & Savery, D. (2015). Rho-kinase-dependent actin turnover and actomyosin disassembly are necessary for mouse spinal neural tube closure. Journal of Cell Science, 128(13), 2468-2481. Link. (Explores the importance of cytoskeletal dynamics in neural tube closure.)
Massa, V., Savery, D., Ybot-Gonzalez, P., Ferraro, E., Rongvaux, A., Cecconi, F., ... & Copp, A. J. (2009). Apoptosis is not required for mammalian neural tube closure. Proceedings of the National Academy of Sciences, 106(20), 8233-8238. Link. (Discusses the role of apoptosis in neural tube closure.)
Yamaguchi, Y., Shinotsuka, N., Nonomura, K., Takemoto, K., Kuida, K., Yosida, H., & Miura, M. (2011). Live imaging of apoptosis in a novel transgenic mouse highlights its role in neural tube closure. Journal of Cell Biology, 195(6), 1047-1060. Link. (Highlights the significance of ion channels in the process of neurulation.)

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